run_blastdbcmd {rCRUX} | R Documentation |
Given a row from a blast_seed formatted data.frame, extracts arguments for blastdbcmd, then returns the output of the blastdbcmd call.
run_blastdbcmd(query_row, db, ncbi_bin = NULL)
query_row |
a row from get_seeds_local or get_seeds_remote |
db |
a directory with a blast-formatted database |
ncbi_bin |
is the path to blast+ tools if not in the user's path. Specify only if blastn and blastdbcmd are not in your path. The default is ncbi_bin = NULL - if not specified in path do the following: ncbi_bin = "/my/local/ncbi-blast-2.10.1+/bin/". |
a fasta-formatted character vector